Multiple approaches for massively parallel sequencing of SARS-CoV-2 genomes directly from clinical samples

Table 1 Metatranscriptomic sequencing data summary of eight SARS-CoV-2-positive clinical samples collected from Guangzhou in February 2020

Sample ID	Sample type	Ct	No. of sequencing read pairs	No. of SARS-CoV-2 read pairs	Percentage of SARS-CoV-2 read pairs	Coverage (%)	Depth (×)
GZMU0047	Nasal swab	18	1,547,648,648	85,316,930	5.513	100	113,021
GZMU0016	Sputum	21	1,578,573,142	7,489,563	0.474	99.96	12,734
GZMU0048	Throat swab	24	1,647,198,588	3,365,330	0.204	99.91	6508
GZMU0044	Nasal swab	26	1,609,367,415	7,275,402	0.452	99.92	12,758
GZMU0030	Throat swab	29	1,725,727,056	31,148	0.002	99.87	69
GZMU0014	Sputum	30	1,596,713,550	46,199	0.003	99.9	95
GZMU0042	Sputum	32	1,481,162,934	567,266	0.038	99.94	1133
GZMU0031	Anal swab	32	1,671,721,507	25,392	0.002	99.89	14

ISSN: 1756-994X